Marian Bubak
 
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Journal papers

Book chapters

Papers in Lecture Notes in Computer Science

Selected conference papers

 
 

Journal papers

  1. Maciej Malawski, Tomasz Gubala, and Marian Bubak: Component-based Approach for Programming and Running Scientific Applications on Grids and Clouds, International Journal of High Performance Computing, accepted for publication (August 2011)

  2. Adam Belloum, Márcia A. Inda, Dmitry Vasunin, Vladimir Korkhov, Zhiming Zhao, Han Rauwerda, Timo M. Breit, Marian Bubak, Louis O. Hertzberger: Collaborative e-Science Experiments and Scientific Workflows. IEEE Internet Computing (INTERNET) 15(4):39-47 (2011)

  3. Bartosz Balis, Bartosz Kowalewski, Marian Bubak: Real-time Grid monitoring based on complex event processing. Future Generation Comp. Syst. (FGCS) 27(8):1103-1112 (2011)

  4. J.T. Moscicki; M. Lamanna; M.T. Bubak and P.M.A. Sloot: Processing moldable tasks on the grid: Late job binding with lightweight user-level overlay, Future Generation Computer Systems, vol. 27, nr 6 pp. 725-736. June 2011. ISSN 0167-739X. (DOI: 10.1016/j.future.2011.02.002)

  5. Uwe Schwiegelshohn, Rosa M. Badia, Marian Bubak, Marco Danelutto, Schahram Dustdar, Fabrizio Gagliardi, Alfred Geiger, Ladislav Hluchý, Dieter Kranzlmüller, Erwin Laure, Thierry Priol, Alexander Reinefeld, Michael M. Resch, Andreas Reuter, Otto Rienhoff, Thomas Rüter, Peter M. A. Sloot, Domenico Talia, Klaus Ullmann, Ramin Yahyapour: Perspectives on grid computing. Future Generation Comp. Syst. (FGCS) 26(8):1104-1115 (2010)

  6. Meizner, Jan and Malawski, Maciej and Bubak, Marian: Flexible and Secure Access to Computing Clusters. Computer Science, 11. pp. 21-36 (2010)

  7. P.M.A Sloot, Peter V. Coveney, G. Ertayalan, V. Mueller, C.A. Boucher, and M. Bubak: HIV decision Support: from Molecule to Man. Philosophical Transactions of the Royal Society A, vol 367, pp 2691 - 2703, 2009, doi: 10.1098/rsta.2009.0043

  8. R. Wismueller, M. Bubak, and W. Funika: High-Level Application Specific Performance Analysis using the G-PM Tool. Future Generation Computer Systems, 24(2):121-132, 2008.

  9. P. Sloot, P. Coveney, M.T. Bubak, A-m. Vandamme, B. O Nuallain, D. van de Vijver, and Ch. Boucher: Virolab: A Collaborative Decision Support System in Viral Deseas Treatment. Reviews in Antiviral Therapy, vol 3, pp 4-7, 2008

  10. B. Balis, M. Bubak, and B. Labno: Monitoring of Grid scientific workflows. Scientific Programming, 16 (2-3):205-216, 2008.

  11. B. Balis, M. Bubak, and M. Wegiel. LGF: A Flexible Framework for Exposing Legacy Codes as Services. Future Generation Computer Systems, 24(7):711-719, 2008.

  12. W. Rzasa, M. Bubak, B. Balis, and T. Szepieniec: Overhead Verification for Cryptographically Secured Transmission on the Grid. Computing and Informatics, 26(1):88-101, 2007.

  13. Katarzyna Rycerz, Alfredo Tirado-Ramos, Alessia Gualandris, Simon F. Portegies Zwart, Marian Bubak, and Peter M.A. Sloot: Interactive N-Body Simulations on the Grid: HLA versus MPI. The International Journal of High Performance Computing Applications, vol 21, No 2, pp. 210-221, 2007

  14. P.M.A. Sloot, A. Tirado-Ramos, I. Altintas, M. Bubak, Ch. Boucher, From Molecule to Man: Decision Support in Individualized E-Health, IEEE Computer, vol. 36, No 11, pp. 40-46, November 2006

  15. Marian Bubak, Tomasz Gubala, Michal Kapalka, Maciej Malawski, Katarzyna Rycerz, Workflow composer and service registry for grid applications, Future Generation Computer Systems, vol 21, no 1, 2005, 79-86

  16. Rycerz K., Bubak M., Malawski M., Sloot P., A Framework for HLA-Based Interactive Simulations on the Grid, SIMULATION, vol 81, no 1, 2005, 67-76

  17. M. Bubak, M. Malawski, P.Nowakowski, R. Pajak, K. Rycerz, CrossGrid: An EU Integrated Project, Foundations of Computing and Decision Sciences, vol 29, no 1-2, 2004

  18. M. Bubak, M. Malawski, K. Rycerz and M. Turala, CrossGrid - Tools and Services for Interactive Grid Applications, TASK QUARTERLY. Scientific Bulletin of Academic Centre in Gdansk, TASK Publishing, 2004, vol 8, 503-512

  19. W. Funika, M. Bubak, M. Smętek, R. Wismüller, A Monitoring Platform for Distributed Java Applications, TASK QUARTERLY. Scientific Bulletin of Academic Centre in Gdansk, TASK Publishing, 2004, vol 8, 525-536

  20. K. Rycerz, M. Bubak, M. Malawski, P. Sloot, Interactive Grid Computing: Adapting High Level Architecture-based Applications to the Grid, TASK QUARTERLY. Scientific Bulletin of Academic Centre in Gdansk, TASK Publishing, 2004, vol 8, 549-559

  21. Alfredo Tirado-Ramos, Peter M. A. Sloot, Alfons G. Hoekstra, Marian Bubak, An integrative approach to high-performance biomedical problem solving environments on the Grid, Parallel Computing, vol 30, 9-10, 2004, 1037-1055

  22. R. Wismüller, M. Bubak, W. Funika, B. Balis, A Performance Analysis Tool for Interactive Applications on the Grid, Intl. Journal of High Performance Computing Applications, vol 18, no 3, 305-316, 2004

  23. Balis, B., Bubak, M., Funika, W., Wismüller, R., Radecki, M., Szepieniec, T., Arodz, T., Kurdziel, M., Grid Environment for On-line Application Monitoring and Performance Analysis, Scientific Pogrammning, vol 12, no 4, 2004, 239-251

  24. Bubak, M., Funika, W., Wismüller R., Metel P., Orlowski R., Monitoring of Distributed Java Applications, Future Generation Computer Systems, 2003, vol 19, 651-663

  25. Balis, B., Bubak, M., Funika, W., Wismüller, R., A Monitoring System for Multithreaded Applications, Future Generation Computer Systems, July 2003, vol 19, no 5, 641 - 650

  26. M.S. Magdon-Maksymowicz, M. Sitarz, M. Bubak, A.Z. Maksymowicz, J. Szewczyk, Effect of time slowing in biological ageing, Computer Physics Communications, 147, 2002, 621-624

  27. T. Fahringer, K. Sowa-Pieklo, P. Czerwiński, P. Brezany, M. Bubak, R. Koppler, R. Wismüller:SPiDER - An Advanced Symbolic Debugger for Fortran 90/HPFPrograms, Concurrency and Computation: Practice and Experience, vol 14, 103-136, 2002

  28.  Bubak, M., Zbik, D., Dick van Albada, Iskra, K., Sloot, P., Portable library of migratable sockets. Scientific Programming, Vol 9, Number 4/2001, pp. 211-222, 2001

  29. Marian Bubak, Dawid Kurzyniec, Piotr Łuszczek, Vaidy Sunderam, Creating Java to Native Code Interfaces with Janet. Scientific Programming, vol 9, no 1, 39-50, 2001

  30. Marian Bubak, Dawid Kurzyniec, Piotr Łuszcek, Convenient Use of Legacy Software in Java with Janet Package.Future Generation Computer Systems, vol 17, 987-997, 2001

  31. Bubak, M., Czerwiński, P., Traffic Simulation Using Cellular Automata and Continuous Models, Computer Physics Communications 121-122 (1999) 395-398.

  32. Maksymowicz, A.Z., Bubak, M., Zając, K., and Magdoń, M., Simulation of Aging with an Extended Penna Model, Computer Physics Communications 121-122 (1999) 113-115.

  33. Bubak, M., Mościński, J., Pogoda, M., and Słota, R., Parallel Implementation of 2-D LGA and MD Simulations, Computer Physics Communications 121-122 (1999) 618

  34. Maksymowicz, A.Z., Bubak, M., Zając, K., and Magdoń, M., Impact of Mutation and Overhunting on Population Extinction in the Penna Model, Computer Physics Communications 121-122 (1999) 693

  35. Bubak, M., Chrobak, R., Kitowski, J., Mościński, J., Pietrzyk, M., Parallel finite element calculation of plastic deformation on Exemplar SPP 1000 and networked workstations, Journal of Materials Processing Technology, 60 (1996) 409-413.

  36. Bubak, M., Chrobak, R., Mościński, J., Pietrzyk, M., Efficient program for finite element calculations of platic deformations in metal forming processes, Journal of Materials Processing Technology 45 (1994) 677-681

  37. Boryczko, K., Bubak, M., Kitowski, J., Mościński, J. and Pogoda, M., Molecular dynamics and lattice gas parallel algorithms for transputers and networked workstations, Transport Theory and Statistical Physics 23 (1994) 297-311

  38. M. Bubak and M.P. Faifman: Cross sections for hydrogen muonic atomic processes in two-level approximation of the adiabatic framework, JINR-E4-87-464

  39. Guła, A., Bubak, M., Guła, E., Deadtime effects in the time distributions of muon-catalyzed fusion events, Atom-kern-energie - Kerntechnik, 48 (1986) 100-104.

  40. Guła, A., Adamczak, A., Bubak, M., Back decay of muonic molecular resonances and the measured value of dμd formation rate in muon-catalyzed fusion in deuterium, Physics Letters, 109A (1985) 224-227.

  41. M. Bubak, V.M. Bystritsky, A. Gula: Kinetic formulae for (D+D)$_{mu}$ and (T+T)$_{mu}$ muon-catalyzed nuclear synthesis, Acta Phys. Pol. B, 16:575-588, 1985

  42. Guła, A., Bubak, M., and Niwicki, J., Cycle-by-cycle kinetic formulae for muon-catalyzed fusion in deuterium - derivation and comparison with experimental data, Atomkern-energie-Kerntechnik, 46 (1985) 205—209.

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Book chapters

  1. Katarzyna Rycerz and Marian Bubak: Building and Running Collaborative Distributed Multiscale Applications, in: W. Dubitzky, K. Kurowsky, B. Schott (Eds), Chapter 6, Large Scale Computing, J. Wiley and Sons, 2012

  2. M. Bubak, T. Gubala, M. Kasztelnik, M. Malawski. Building Collaborative Applications for System-level Science. Advances in Parallel Computing, Volume 18, 2009, High Speed and Large Scale Scientific Computing, Edited by Wolfgang Gentzsch, Lucio Grandinetti, Gerhard Joubert, ISBN 978-1-60750-073-5 DOI: 10.3233/978-1-60750-073-5-299

  3. B. Balis, M. Bubak, M. Pelczar, J. Wach: Provenance Tracking and End-User Oriented Query Construction, in: M. Cannataro (Ed.), Chapter IV, Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare, Information Science Reference, 2009, IGI GlobalISBN: 978-1-60566-374-6

  4. T. Gubala, M. Bubak, P.M.A. Sloot:Semantic Integration of Collaborative Research Environments, Chapter XXVI,in: M. Cannataro (Ed.), Chapter XXVI, Handbook of Research on Computational GridTechnologies for Life Sciences, Biomedicine and Healthcare,Information Science Reference, 2009, IGI GlobalISBN: 978-1-60566-374-6

  5. Marian Bubak, Maciej Malawski, Tomasz Gubala, Marek Kasztelnik, Piotr Nowakowski, Daniel Harezlak, Tomasz Bartynski, Joanna Kocot, Eryk Ciepiela, Wlodzimierz Funika, Dariusz Krol, Bartosz Balis, Matthias Assel, Alfredo Tirado-Ramos:Virtual Laboratory for Collaborative Applications, Chapter XXVII, in: M. Cannataro (Ed.), Handbook of Research on Computational GridTechnologies for Life Sciences, Biomedicine and Healthcare,Information Science Reference, 2009, IGI GlobalISBN: 978-1-60566-374-6

  6. A. Tirado-Ramos, P.M.A. Sloot, M. Bubak, Grid-based Interactive Decision Support in Biomedicine, chapter 10 in: T. El-Ghazali, A. Zomaya (Eds), Grid for Bioinformatics and Computational Bilogy, John Wiley and Sons, USA, January 2008, ISBN-10: 0-471-78409-5,

  7. Alfons G. Hoekstra, Simon Portegies Zwart, Marian Bubak, and Peter M.A. Sloot, Toward Distributed Petascale Computing, chapter 10 in: David A. Bader (Ed), Petascale Computing: Algorithms and Applications, Chapman Hall/CRC Computational Science Volume: 1, ISBN: 9781584889090, 2007

  8. Balis, B., Bubak, M., Wegiel, M., A Solution for adapting Legacy Code as Web Services, in: V. Getov, T. Kielmann (Eds), Component Models and Systems for Grid Applications, Springer, 2005, 57-75, ISBN 0-387-23351-2

  9. Włodzimierz Funika, Marian Bubak, Marcin Smętek, Roland Wismüller, An OMIS-based approach to monitoring distributed Java applications in: Kwong, Y.C. (ed): Annual Review of Scalable Computing, Series on Scalable Computing, vol 6, World Scientific, 2004, chapter 1, 1-29

  10. B. Balis, M. Bubak, W. Funika, T. Szepieniec, R. Wismüller, Monitoring of Interactive Grid Applications, in: Getov et al., (eds), Performance Analysis and Grid Computing, Kluwer Academic Publishers, 2003, ISBN1-4020-7693-2, 265-273

  11. M. Bubak, W. Funika, R. Wismüller, Performance Analysis Tool for Interactive Grid Applications, in: Getov et al., (eds), Performance Analysis and Grid Computing, Kluwer Academic Publishers, 2003, ISBN1-4020-7693-2

  12. Brezany, P., Bubak, M., Luszczek, P., Malawski, M., Zajac, K., A Runtime Support for Large-Scale Irregular Computing on Clusters and Grids, in: Kwong, Y.C. (ed): Annual Review of Scalable Computing, Series on Scalable Computing, vol 5, Singapore University Press and World Scientific, 2003, chapter 2, 30-64

  13. Marian Bubak, Wlodzimierz Funika, Bartosz Balis, Roland Wismüller, On-line OCM-based tool support for parallel applications in: Kwong, Y.C. (ed): Annual Review of Scalable Computing, Series on Scalable Computing, vol 3, Singapore University Press and World Scientific, 2001, chapter 2, 32-62

  14. Bubak, M., Sowa, K., Object-Oriented Implementation of Parallel Genetic Algorithm, Chapter 16 in: Buyya, R. (Ed.): High Performance Cluster Computing. vol. 2: Programming and Applications, pp. 331-349, Prentice Hall, Inc., 1999; http://www.phptr.com

  15. Mościński, J., Alda, W., Bubak, M., Dzwinel, W., Kitowski, J., Pogoda, M., Yuen, D., Molecular Dynamics Simulations of Rayleigh-Taylor Instability,  Annual Review of Computational Physics, vol. V, 1997, pp. 97-136.

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Papers in Lecture Notes in Computer Science

  1. J. Meizner, M. Malawski, E. Ciepiela, M. Kasztelnik, D. Harezlak, P. Nowakowski, D. Krol, T. Gubala, W. Funika, M. Bubak, T. Mikołajczyk, P. Plaszczak, K. Wilk, and M. Assel: "ViroLab Security and Virtual Organization Infrastructure" in: Y. Dou, R. Gruber, and J. Joller (Eds.): APPT 2009 - Advanced Parallel Processing Technologies 8th International Symposium, Rapperswil, Switzerland, August 24-25, 2009, LNCS 5737, pp. 230–245, Springer, 2009

  2. B. Labno, M. Bubak, and B. Balis: A P2P Approach to Resource Discovery in On-Line Monitoring of Grid Workflows, In E. Luque, T. Margalef, and D. Benitez, editors, Euro-Par 2008 - Parallel Processing, 14th International Euro-Par Conference, Las Palmas de Gran Canaria, Spain, August 26-29, 2008, Proceedings, volume 5168 of Lecture Notes in Computer Science, pages 37-46. Springer, 2008.

  3. T. Gubala, Marek Kasztelnik, Maciej Malawski, Marian Bubak: Towards a System-Level Science Support, in: M. Bubak, G. D. van Albada and J. Dongarra and P. M.A. Sloot (Eds.), Proceedings of Computational Science - ICCS 2008, 8th International Conference, Krakow, Poland, June 2008, volume I, LNCS 5101, Springer, 2008, pp. 56-65.

  4. T. Szepieniec and M. Bubak: Evaluation of Eligible Jobs Maximization Algorithm for DAG Scheduling in Grids, in: M. Bubak, G. D. van Albada and J. Dongarra and P. M.A. Sloot (Eds.), Proceedings of Computational Science - ICCS 2008, 8th International Conference, Krakow, Poland, June 2008, volume I, LNCS 5101, Springer, 2008, pp. 254-263.

  5. K. Rycerz, M. Bubak and P. M.A. Sloot: Dynamic Interactions in HLA Component Model for Multiscale Simulations, in: M. Bubak, G. D. van Albada and J. Dongarra and P. M.A. Sloot (Eds.), Proceedings of Computational Science - ICCS 2008, 8th International Conference, Krakow, Poland, June 2008, volume II, LNCS 5102, Springer, 2008, pp. 217-226.

  6. B. Balis, M. Bubak, M. Pelczar and Jakub Wach: Provenance Querying for End-Users: A Drug Resistance Case Study, in: M. Bubak, G. D. van Albada and J. Dongarra and P. M.A. Sloot (Eds.), Proceedings of Computational Science - ICCS 2008, 8th International Conference, Krakow, Poland, June 2008, volume III, LNCS 5103, Springer, 2008, pp. 80-89.

  7. M. Assel, P. Nowakowski and Marian Bubak: Integrating and Accessing Medical Data Resources within the ViroLab Virtual Laboratory, in: M. Bubak, G. D. van Albada and J. Dongarra and P. M.A. Sloot (Eds.), Proceedings of Computational Science - ICCS 2008, 8th International Conference, Krakow, Poland, June 2008, volume III, LNCS 5103, Springer, 2008, pp. 90-99.
     

  8. M. Malawski, T. Bartynski, and M. Bubak: A Tool for Building Collaborative Applications by Invocation of Grid Operations, in: M. Bubak, G. D. van Albada and J. Dongarra and P. M.A. Sloot (Eds.), Proceedings of Computational Science - ICCS 2008, 8th International Conference, Krakow, Poland, June 2008, volume III, LNCS 5103, Springer, 2008, pp. 243-252.

  9. B. Kowalewski, M. Bubak, and B. Balis: An Event-Based Approach to Reducing Coupling in Large-Scale Applications, in: M. Bubak, G. D. van Albada and J. Dongarra and P. M.A. Sloot (Eds.), Proceedings of Computational Science - ICCS 2008, 8th International Conference, Krakow, Poland, June 2008, volume III, LNCS 5103, Springer, 2008, pp. 358-367.

  10. W. Funika, D. Harezlak, D. Krol, and M. Bubak: Environment for Collaborative Development and Execution of Virtual Laboratory Applications, in: M. Bubak, G. D. van Albada and J. Dongarra and P. M.A. Sloot (Eds.), Proceedings of Computational Science - ICCS 2008, 8th International Conference, Krakow, Poland, June 2008, volume III, LNCS 5103, Springer, 2008, pp. 446-455.

  11. A. Belloum, Z. Zhao, and M. Bubak: International Workshop on Applications of Workflows in Computational Science (AWCS 08), in: M. Bubak, G. D. van Albada and J. Dongarra and P. M.A. Sloot (Eds.), Proceedings of Computational Science - ICCS 2008, 8th International Conference, Krakow, Poland, June 2008, volume III, LNCS 5103, Springer, 2008, pp. 459-462.

  12. A. Wibisono, Z. Zhao, A. Belloum, and M. Bubak: A Framework for Interactive Parameter Sweep Applications, in: M. Bubak, G. D. van Albada and J. Dongarra and P. M.A. Sloot (Eds.), Proceedings of Computational Science - ICCS 2008, 8th International Conference, Krakow, Poland, June 2008, volume III, LNCS 5103, Springer, 2008, pp. 481-490.

  13. B. Balis, M. Bubak, and J. Wach: Provenance Tracking in the ViroLab Virtual Laboratory, in: R. Wyrzykowski, J. Dongarra, K. Karczewski, and J. Wasniewski (Eds.), Proceedings of 7-th International Conference, PPAM 2007, Gdansk, Poland, September 2007, LNCS 4967, Springer 2008, pp. 381-390

  14. K. Rycerz, M. Bubak, and P. M. A. Sloot: Using HLA and Grid for Distributed Multiscale Simulations, in: R. Wyrzykowski, J. Dongarra, K. Karczewski, and J. Wasniewski (Eds.), Proceedings of 7-th International Conference, PPAM 2007, Gdansk, Poland, September 2007, LNCS 4967, Springer 2008, pp.780-787

  15. T. Bartynski, M. Malawski, T. Gubala, and M. Bubak: Universal Grid Client: Grid Operation Inveker, in: R. Wyrzykowski, J. Dongarra, K. Karczewski, and J. Wasniewski (Eds.), Proceedings of 7-th International Conference, PPAM 2007, Gdansk, Poland, September 2007, LNCS 4967, Springer 2008, pp. 1068-1077

  16. B. Balis, M. Bubak, K. Sterna, and A. Bemben: Efficient and Reliable Execution of Legacy Codes Exposed as Services. In Y. Shi et al., ICCS 2007, Part I, volume 4487 of Lecture Notes in Computer Science, pages 390-397, Springer-Verlag, 2007.

  17. B. Balis, M. Bubak, K. Guzy, Fine-Grained Instrumentation and Monitoring of Legacy Application ina Service-Oriented Environment, in: V. N. Alexandrow, G. D. van Albada, P. M. A. Sloot, J. Dongarra (Eds.), Proceedings of Computational Science - ICCS 2006, 6th International Conference Reading, UK, May 2006, volume II, LNCS 3992, Springer, 2006, pp. 542-548.

  18. M. Bubak, W. Funika, M. Koch, D. Dziok, A. D. Malony, M. Smętek, R. Wismüller, Towards the Performance Visualization of Web-Service Based Applications, in: Roman Wyrzykowski, Jack Dongarra, Norbert Meyer, Jerzy Wasniewski (Eds.), Parallel Processing and Applied Mathematics:6th International Conference, PPAM 2005, Poznan, Poland, September 11-14, 2005, Revised Selected Papers, Lecture Notes in Computer Science, 3911, Springer, 2006, pp. 108-115

  19. H.-L. Truong, B. Balis, M. Bubak, J. Dziwisz, T. Fahringer, A. Hoheisel, Towards Distributed Monitoring and Performance Analysis Servicesin the K-WfGrid Project, in: Roman Wyrzykowski, Jack Dongarra, Norbert Meyer, Jerzy Wasniewski (Eds.), Parallel Processing and Applied Mathematics:6th International Conference, PPAM 2005, Poznan, Poland, September 11-14, 2005, Revised Selected Papers, Lecture Notes in Computer Science, 3911, Springer, 2006, pp. 156-163

  20. T. Gubala, M. Bubak, GridSpace - Semantic Programming Environment for the Grid, in: Roman Wyrzykowski, Jack Dongarra, Norbert Meyer, Jerzy Wasniewski (Eds.), Parallel Processing and Applied Mathematics:6th International Conference, PPAM 2005, Poznan, Poland, September 11-14, 2005, Revised Selected Papers, Lecture Notes in Computer Science, 3911, Springer, 2006, pp. 172-179

  21. T. Gubala, M. Bubak, M. Malawski, K. Rycerz, Semantic-Based GridWorkflow Composition, in: Roman Wyrzykowski, Jack Dongarra, Norbert Meyer, Jerzy Wasniewski (Eds.), Parallel Processing and Applied Mathematics:6th International Conference, PPAM 2005, Poznan, Poland, September 11-14, 2005, Revised Selected Papers, Lecture Notes in Computer Science, 3911, Springer, 2006, pp. 651-658

  22. P. Jurczyk, M. Golenia, M. Malawski, D. Kurzyniec, M. Bubak, V. S. Sunderam, Enabling Remote Method Invocations in Peer-to-Peer Environments: RMIX over JXTA, in: Roman Wyrzykowski, Jack Dongarra, Norbert Meyer, Jerzy Wasniewski (Eds.), Parallel Processing and Applied Mathematics:6th International Conference, PPAM 2005, Poznan, Poland, September 11-14, 2005, Revised Selected Papers, Lecture Notes in Computer Science, 3911, Springer, 2006, pp. 667-674

  23. K. Rycerz, M. Bubak, M. Malawski, P. M. A. Sloot, A Grid Service for Management of Multiple HLA Federate Processes, in: Roman Wyrzykowski, Jack Dongarra, Norbert Meyer, Jerzy Wasniewski (Eds.), Parallel Processing and Applied Mathematics:6th International Conference, PPAM 2005, Poznan, Poland, September 11-14, 2005, Revised Selected Papers, Lecture Notes in Computer Science, 3911, Springer, 2006, pp. 699-706

  24. Roland Wismüller, Marian Bubak, Włodzimierz Funika, High-Level Application Specific Performance Analysis Using the G-PM Tool, in: Beniamino Di Martino, Dieter Kranzlmueller, Jack Dongarra (eds), Recent Advances in Parallel Virtual Machine and Message Passing Interface. 12th European PM/MPI Users' Group Meeting, Lecture Notes in Computer Science, 3666, Springer, 2005, 317-324

  25. Zajac, K., Tirado-Ramos, A., Zhao, Z., Sloot, P., Bubak, M., Grid Services for HLA-Based Distributed Simulation Frameworks, in: Rivera, F. F. and et al. (eds), Proceedings of Grid Computing, First European Across Grids Conference, Santiago de Compostela, Spain, February 2003, Lecture Notes in Computer Science, 2970, Springer, 2004, 147-154

  26. Balis, B., Bubak, M., Funika, W., Szepieniec, T., Wismüller R., Radecki, M., Monitoring Grid Applications with Grid-Enabled OMIS Monitor, in: Rivera, F. F. and et al. (eds), Proceedings of Grid Computing, First European Across Grids Conference, Santiago de Compostela, Spain, February 2003, Lecture Notes in Computer Science, 2970, Springer, 2004, 230-239

  27. Bubak, M., Funika, W., Wismüller R., Arodz, T., Kurdziel, M., The G-PM Tool for Grid-Oriented Performance Analysis, in: Rivera, F. F. and et al. (eds), Proceedings of Grid Computing, First European Across Grids Conference, Santiago de Compostela, Spain, February 2003, Lecture Notes in Computer Science, 2970, Springer, 2004, 240-248

  28. Bubak, M., Nowakowski, P., Pajak, R., An Overview of European Grid Projects, in: Rivera, F. F. and et al. (eds), Proceedings of Grid Computing, First European Across Grids Conference, Santiago de Compostela, Spain, February 2003, Lecture Notes in Computer Science, 2970, Springer, 2004, 299-308

  29. Bubak, M., Malawski, M., Zajac, K., The CrossGrid Architecture: Applications, Tools, and Grid Services, in: Rivera, F. F. and et al. (eds), Proceedings of Grid Computing, First European Across Grids Conference, Santiago de Compostela, Spain, February 2003, Lecture Notes in Computer Science, 2970, Springer, 2004, 309-316

  30. Balis, B., Bubak, M., Funika, W., Wismüller, R., Kaplita, G., Monitoring Threaded Application with Thread-Enabled OMIS Monitor, in: Wyrzykowski, R., Dongarra, J., Paprzycki, M., Waśniewski, J. (Eds), Parallel Processing and Applied Mathematics. 5th InternationalConference, PPAM 2003, Czestochowa, Poland, September 2003, Lecture Notes in Computer Science, 3019, Springer, 331-337

  31. Bubak, M., Funika, W., Smętek, M., Kilianski, Z., Wismüller, R., Event Handling in the J-OCM Monitoring System, in: Wyrzykowski, R., Dongarra, J., Paprzycki, M., Waśniewski, J. (Eds), Parallel Processing and Applied Mathematics. 5th International Conference, PPAM 2003, Czestochowa, Poland, September 2003, Lecture Notes in Computer Science, 3019, Springer, 2004, 344-351

  32. Bubak, M., Funika, W., Smętek, M., Kilianski, Z., Wismßller, R., Request Processing in the Java-Oriented OMIS Compliant Monitoring System, in: Wyrzykowski, R., Dongarra, J., Paprzycki, M., Waśniewski, J. (Eds), Parallel Processing and Applied Mathematics. 5th International Conference, PPAM 2003, Czestochowa, Poland, September 2003, Lecture Notes in Computer Science, 3019, Springer, 2004, 352-359

  33. Balis, B., Bubak, M., Rzasa, W., Szepieniec, T., Wismüller, R., Security in the OCM-G Grid Application Monitoring System, in: Wyrzykowski, R., Dongarra, J., Paprzycki, M., Waśniewski, J. (Eds), Parallel Processing and Applied Mathematics. 5th International Conference, PPAM 2003, Czestochowa, Poland, September 2003, Lecture Notes in Computer Science, 3019, Springer, 2004, 779-787

  34. Bubak, M., Górka, K., Gubala, T., Malawski, M., Zajac, K., Automatic Flow Bulding for Component Grid Applications, in: Wyrzykowski, R., Dongarra, J., Paprzycki, M., Waśniewski, J. (Eds), Parallel Processing and Applied Mathematics. 5th International Conference, PPAM 2003, Czestochowa, Poland, September 2003, Lecture Notes in Computer Science, 3019, Springer, 2004, 804-811

  35. Zajac, K., Bubak, M., Malawski, M., Sloot, P., Execution and Migration Management of HLA-Based Interactive Simulations on the Grid, in: Wyrzykowski, R., Dongarra, J., Paprzycki, M., Waśniewski, J. (Eds), Parallel Processing and Applied Mathematics. 5th InternationalConference, PPAM 2003, Czestochowa, Poland, September 2003, Lecture Notes in Computer Science, 3019, Springer, 2004, 872-879

  36. Balis, B., Bubak, M., Rzasa, W., Szepieniec, T., Efficiency of the GSI Secured Network Transmission, in: Bubak, M., van Albada, G. D., Sloot, P. M. A., Dongarra, J. J.(eds), Computational Science - ICCS 2004. 4th International Conference, Kraków, Poland, June 2004, Lecture Notes in Computer Science, 3036, Springer, 2004, 107-115

  37. Wismüller, R., Bubak, M., Funika, W., Arodz, T., Kurdziel, M., Performance Measurement Model in the G-PM Tool, in: Bubak, M., van Albada, G. D., Sloot, P. M. A., Dongarra, J. J.(eds), Computational Science - ICCS 2004. 4th International Conference, Kraków, Poland, June 2004, Lecture Notes in Computer Science, 3036, Springer, 2004, 462-465

  38. Balis, B., Bubak, M., Wegiel, M., Adaptation of Legacy Software to Grid Services, in: Bubak, M., van Albada, G. D., Sloot, P. M. A., Dongarra, J. J.(eds), Computational Science - ICCS 2004. 4th International Conference, Kraków, Poland, June 2004, Lecture Notes in Computer Science, 3038, Springer, 2004, 26-33

  39. Bubak, M., Gubala, T., Kapalka, M., Malawski, M., Rycerz, K., Grid Service Registry for Workflow Composition Framework, in: Bubak, M., van Albada, G. D., Sloot, P. M. A., Dongarra, J. J.(eds), Computational Science - ICCS 2004. 4th International Conference, Kraków, Poland, June 2004, Lecture Notes in Computer Science, 3038, Springer, 2004, 34-41

  40. Funika, W., Bubak, M., Smętek, M., Monitoring System for Distributed Java Applications, in: Bubak, M., van Albada, G. D., Sloot, P. M. A., Dongarra, J. J.(eds), Computational Science - ICCS 2004. 4th International Conference, Kraków, Poland, June 2004, Lecture Notes in Computer Science, 3038, Springer, 2004, 472-479

  41. Rycerz, K., Bubak, M., Malawski, M., Sloot, P., Support for Effective and Fault Tolerant Execution of HLA-BasedApplications in the OGSA Framework, in: Bubak, M., van Albada, G. D., Sloot, P. M. A., Dongarra, J. J.(eds), Computational Science - ICCS 2004. 4th International Conference, Kraków, Poland, June 2004, Lecture Notes in Computer Science, 3038, Springer, 2004, 848-855

  42. R. Wismüller, M. Bubak, W. Funika, T. Arodz, M. Kurdziel, Support for User-Defined Metrics in the Online Performance Analysis Tool G-PM, in: M. D. Dikaiakos (ed), Grid Computing. Second European AcrossGrid Conference, AcrossGrids 2004, Nicosia, Cypus, January 2004, Revised Papers, Lecture Notes in Computer Science, 3166, Springer, 2004, 159-168

  43. M. Bubak, M. Malawski, G. Mlynarczyk, P. Nowakowski, R. Pajak, K. Rycerz, M. Turala, Software Engineering in the EU CrossGrid Project, in: M. D. Dikaiakos (ed), Grid Computing. Second European AcrossGrid Conference, AcrossGrids 2004, Nicosia, Cypus, January 2004, Revised Papers, Lecture Notes in Computer Science, 3166, Springer, 2004, 169-178

  44. M. Malawski, M. Wieczorek, M. Bubak, E. Richter-Was, Lhcmaster - A System for Storage and Analysis of Data Coming fromthe ATLAS Simulations, in: M. D. Dikaiakos (ed), Grid Computing. Second European AcrossGrid Conference, AcrossGrids 2004, Nicosia, Cypus, January 2004, Revised Papers, Lecture Notes in Computer Science, 3166, Springer, 2004, 182-189

  45. B. Balis, M. Bubak, M. Radecki, T. Szepieniec, R. Wismüller, Application Monitoring in CrossGrid and Other Grid Projects, in: M. D. Dikaiakos (ed), Grid Computing. Second European AcrossGrid Conference, AcrossGrids 2004, Nicosia, Cypus, January 2004, Revised Papers, Lecture Notes in Computer Science, 3166, Springer, 2004, 212-219

  46. T. Szepieniec, M. Radecki, K. Rycerz, M. Bubak, M. Malawski, Tools and Services for Interactive Applications on the Grid -The CrossGrid Tutrial, in: D. Kraznzlmueller, P. Kacsuk, J. Dongarra (Eds), Recent Advances in Parallel Virtual Machine and Message Passing Interface. 11t European PM/MPI Users' Group Meeting, Budapest, Hungary, September 2004, Lecture Notes in Computer Science, 3241, Springer, 14-17, 2004

  47. B. Balis, M. Bubak, W. Funika, R. Wismüller, M. Radecki, T. Szepieniec, T. Arodz, M. Kurdziel, Performance Evaluation and Monitoring of Interactive Grid Applications, in: D. Kraznzlmueller, P. Kacsuk, J. Dongarra (Eds), Recent Advances in Parallel Virtual Machine and Message Passing Interface. 11t European PM/MPI Users' Group Meeting, Budapest, Hungary, September 2004, Lecture Notes in Computer Science, 3241, Springer, 2004, 345-352

  48. Bubak, M., Malawski, M., Zajac, K.:Architecture of the Grid for Interactive Applications, in: Sloot, P. M. A. et al., Proceedings of Computational Science - ICCS 2003, International Conference Melbourne, Australia and St. Petersburg, Russia, June 2003, Lecture Notes in Computer Science, 2657, Springer, 2003, 207-213

  49. Balis, B., Bubak, M., Funika, W., Szczepaniec, T., Wismüller, R., Monitoring and Performance Analysis of Grid Applications, in: Sloot, P. M. A. et al., Proceedings of Computational Science - ICCS 2003, International Conference Melbourne, Australia and St. Petersburg, Russia, June 2003, Lecture Notes in Computer Science, 2657, Springer, 2003, 214-224

  50. Tirado-Ramos, A., Zajac, K., Zhao, Z., Sloot, P. M. A., van Albada, D., Bubak, M., Experimental Grid Access for Dynamic Discovery and Data Transfer in Distributed Interactive Simulation Systems, in: Sloot, P. M. A. et al., Proceedings of Computational Science - ICCS 2003, International Conference Melbourne, Australia and St. Petersburg, Russia, June 2003, Lecture Notes in Computer Science, 2657, Springer, 2003, 284-292

  51. Bubak, M., Funika, W., Smętek, M., Kilianski, Z., Wismüller, R., Architecture of Monitoring System for Distributed Java Applications, in: Dongara, J., Laforenza, D., Orlando, S, Proceedings of Recent Advances in Parallel Virtual Machin and Message Passing Interface, 10-th European PVM/MPI User's Group Meeeting, Venice, Italy, Sep.29-Oct.2 2003, Lecture Notes in Computer Science, 2840, Springer, 2003, 447-454

  52. Balis, B., Bubak, M., Funika, W., Wismüller, R., Kaplita, G., in: Dongara, J., Laforenza, D., Orlando, S, Proceedings of Recent Advances in Parallel Virtual Machin and Message Passing Interface, 10-th European PVM/MPI User's Group Meeeting, Venice, Italy, Sep.29-Oct.2 2003, Lecture Notes in Computer Science, 2840, Springer, 2003, 464-472

  53. Bubak, M., Gorka, K., Gubala, T., Malawski, M., Zajac, K., Component-Based System for Grid Application Workflow Composition, in: Dongara, J., Laforenza, D., Orlando, S, Proceedings of Recent Advances in Parallel Virtual Machin and Message Passing Interface, 10-th European PVM/MPI User's Group Meeeting, Venice, Italy, Sep.29-Oct.2 2003, Lecture Notes in Computer Science, 2840, Springer, 2003, 611-618

  54. Balis, B., Bubak, M., Funika, W., Wismüller, R.:A Concept of Portable Monitoring of Multithread Programs, in: Sloot, P.M.A., Kenneth Tan, C.J., Dongara, J.J., Hoekstra, A.G., Proc. Int. Conf. Computational Science - ICCS, Amsterdam, April 21-24, Lecture Notes in Computer Science, 2330, Springer, 2002, 884-893

  55. Brezany, P., Bubak, M., Malawski, M., Zajac, K.:Large-Scale Scientific Irregular Computing on Clusters and Grids, in: Sloot, P.M.A., Kenneth Tan, C.J., Dongara, J.J., Hoekstra, A.G., Proc. Int. Conf. Computational Science - ICCS, Amsterdam, April 21-24, Lecture Notes in Computer Science, 2330, Springer, 2002, 484-493

  56. Bubak, M., Funika, W., Metal, P., Orlowski, R., Wismüller, R.:Monitoring System for Distributed Java Applications, in: Sloot, P.M.A., Kenneth Tan, C.J., Dongara, J.J., Hoekstra, A.G., Proc. Int. Conf. Computational Science - ICCS, Amsterdam, April 21-24, Lecture Notes in Computer Science, 2330, Springer, 2002, 874-883

  57. Brezany, P., Bubak, M., Malawski, M., Zajac, K.:Irregular and Out-of-Core Parallel Computing an Clusters, in: Wyrzykowski, R., Dongarra, J., Paprzycki, M., Wasniewski J., Proc. Int. Conf. PPAM 2001 - The 4th International Conference on Parallel Processing and Applied Mathematics, Naleczow, September 9-12, 2001, Poland, Lecture Notes in Computer Science, 2328, Springer, 2002, 299-306

  58. Bubak, M., Funika, W., Balis, B., Wismüller, R.:A Concept of Grid Application Monitoring, in: Wyrzykowski, R., Dongarra, J., Paprzycki, M., Wasniewski J., Proc. Int. Conf. PPAM 2001 - The 4th International Conference on Parallel Processing and Applied Mathematics, Naleczow, September 9-12, 2001, Poland, Lecture Notes in Computer Science, 2328, Springer, 2002, 307-314

  59. Bubak, M., Funika, W., Metel, P., Orlowski, R., Wismüller, R., Towards a Monitoring Interface Specification for Distributed Java Application, in: Wyrzykowski, R., Dongarra, J., Paprzycki, M., Wasniewski J., Proc. Int. Conf. PPAM 2001 - The 4th International Conference on Parallel Processing and Applied Mathematics, Naleczow, September 9-12, 2001, Poland, Lecture Notes in Computer Science, 2328, Springer, 2002, 315-322

  60. Magdon-Maksymowicz, M. S., Bubak, M., Maksymowicz, A. Z., Biological Time Scale and Ageing in the Penna Model, in: Wyrzykowski, R., Dongarra, J., Paprzycki, M., Wasniewski J., Proc. Int. Conf. PPAM 2001 - The 4th International Conference on Parallel Processing and Applied Mathematics, Naleczow, September 9-12, 2001, Poland, Lecture Notes in Computer Science, 2328, Springer, 2002, 888-895

  61. Balis, B., Bubak, M., Funika, W., Szepieniec, T., Wismüller, R.:, An Infrastructure for Grid Application Monitoring, in: Kranzlmueller, D., Kascuk, P., Dongarra, J., Volkert, J., Recent Advances in Parallel Virtual Machine and Message Passing Interface - 9th European PVM/MPI Users' Group Meeting Linz, Austria, September 29-October 2, 2002, Proceedings, Lecture Notes in Computer Science, 2474, Springer, 2002, 41-49

  62. Bubak, M. and Turala, M., CrossGrid and Its Relatives in Europe, in: Kranzlmueller, D., Kascuk, P., Dongarra, J., Volkert, J., Recent Advances in Parallel Virtual Machine and Message Passing Interface - 9th European PVM/MPI Users' Group Meeting Linz, Austria, September 29-October 2, 2002, Proceedings, Lecture Notes in Computer Science, 2474, Springer, 2002, 14

  63. Bubak, M. and Malawski, M. and Zajac, K.:Towards the CrossGrid Architecture, in: Kranzlmueller, D., Kascuk, P., Dongarra, J., Volkert, J., Recent Advances in Parallel Virtual Machine and Message Passing Interface - 9th European PVM/MPI Users' Group Meeting Linz, Austria, September 29-October 2, 2002, Proceedings, Lecture Notes in Computer Science, 2474, Springer, 2002, 16-24

  64. Bubak, M. and Funika, W. and Wismüller, R.:The CrossGrid Performance Analysis Tools for Interactive Grid Applications, in: Kranzlmueller, D., Kascuk, P., Dongarra, J., Volkert, J., Recent Advances in Parallel Virtual Machine and Message Passing Interface - 9th European PVM/MPI Users' Group Meeting Linz, Austria, September 29-October 2, 2002, Proceedings, Lecture Notes in Computer Science, 2474, Springer, 2002, 50-60

  65. Bubak, M., Zbik, D., Albada, van D., Iskra, K., Sloot, P., Migratable Sockets for Dynamic Load Balancing, in: Hertberger, B., Hoekstra, A.G., Williams, R. (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Amsterdam, June 25-27, 2001, Lecture Notes in Computer Science 2110, pp. 23-30, Springer, 2001.

  66. Bubak, M., Funika, W., Balis, B., Wismuller, R., On-Line Tool Support for Parallel Applications, in: Hertberger, B., Hoekstra, A.G., Williams, R. (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Amsterdam, June 25-27, 2001, Lecture Notes in Computer Science 2110, pp. 415-424, Springer, 2001.

  67. Brezany, P., Bubak, M., Malawski, M., Zajac, K., Advanced Library Support for Irregular and Out-of-Core Parallel Computing, in: Hertberger, B., Hoekstra, A.G., Williams, R. (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Amsterdam, June 25-27, 2001, Lecture Notes in Computer Science 2110, pp. 435-44, Springer, 2001.

  68. Bubak, M., Funika, W., Baliś, B., Wismüller, R., Performance Measurement Support for MPI Applications with PATOP, in: Sorevik, T., Manne, F., Moe, R., Gebremedehin, A., H., (Eds.), Proc. PARA2000 - the Fifth International Workshop on Applied Parallel Computing in Physics, Chemistry and Engineering Science, Bergen, Norway, June 18-21, 2000, Lecture Notes in Computer Science 1947, pp. 288-295, Springer-Verlag, 2001.

  69. Bubak, M., Płaszczak, P., Hydra - Decentralized and Adaptative Approach to Distributed Computing, in: Sorevik, T., Manne, F., Moe, R., Gebremedehin, A., H., (Eds.), Proc. PARA2000 - the Fifth International Workshop on Applied Parallel Computing in Physics, Chemistry and Engineering Science, Bergen, Norway, June 18-21, 2000, Lecture Notes in Computer Science 1947, pp. 243-250, Springer-Verlag, 2001.

  70. Bubak, M., Funika, W., Baliś, B., Wismüller, R., Interoperability of OCM-Based On-Line Tools, in: Proceedings of 7th European PVM/MPI Users' Group Meeting, Balatonfured, Hungary, September 2000, Lecture Notes in Computer Science 1908, Springer-Verlag Berlin-Heidelberg, 2000, pp. 242-249.

  71. Bubak, M., Kurzyniec, D., łuszczek, P.,  A Versatile Support for Binding Native Code to Java, in: Bubak, M., Afsarmanesh, H., Williams, R., Hertzberger, B., (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Amsterdam, May 8-10, 2000, Lecture Notes in Computer Science 1823, pp. 373-384, Springer, 2000

  72. Bubak, M., Luszczek, P.,  Towards Portable Runtime Support for Irregular and Out-of-Core Computations, in: Dongarra, J., Luque, E., Margalef, T., (Eds.),  Recent Advances in Parallel Virtual Machine and Message Passing Interface, Proceedings of 6th European PVM/MPI Users' Group Meeting, Barcelona, Spain, September 1999, Lecture Notes in Computer Science 1697, Springer-Verlag Berlin-Heidelberg, 1999, pp. 59-66.

  73. Bubak, M., Funika, W., Iskra, K., Maruszewski, R., Wismuller, R.,  Enhancing the Functionality of Performance Measurement Tools for Message Passing Environments, in: Dongarra, J., Luque, E., Margalef, T., (Eds.),  Recent Advances in Parallel Virtual Machine and Message Passing Interface, Proceedings of 6th European PVM/MPI Users' Group Meeting, Barcelona, Spain, September 1999, Lecture Notes in Computer Science 1697, Springer-Verlag Berlin-Heidelberg, 1999, pp. 67-74.

  74. Bubak, M., Funika, W., Mlynarczyk, G., Sowa, K., Wismuller, R.,  Symbol Table Management in a HPF Debugger, in: Sloot, P., Bubak, M., Hoekstra, A., Hertzberger, B., (Eds.),  Proc. Int. Conf. High Performance Computing and Networking, Amsterdam, April 12-14, 1999, Lecture Notes in Computer Science 1593, Springer, 1999, pp. 1278-1281.

  75. Bubak, M., Funika, W., Gembarowski, R., Hodurek, P., Wismuller, R.,  Enhancing OCM to Support MPI Applications, in: Sloot, P., Bubak, M., Hoekstra, A., Hertzberger, B., (Eds.),  Proc. Int. Conf. High Performance Computing and Networking, Amsterdam, April 12-14, 1999, Lecture Notes in Computer Science 1593, Springer, 1999, pp. 1274-1277.

  76. Bubak, M., Funika, W., Iskra, K., Maruszewski, R.,  OCM-Based Tools for Performance Monitoring of Message Passing Applications, in: Sloot, P., Bubak, M., Hoekstra, A., Hertzberger, B., (Eds.),  Proc. Int. Conf. High Performance Computing and Networking, Amsterdam, April 12-14, 1999, Lecture Notes in Computer Science 1593, Springer, 1999, pp. 1270-1273.

  77. Bubak, M., Moscicki, J. T., Shiers, J.,  Design of High-Performance C++ Package for Handling of Multidimensional Histograms, in: Sloot, P., Bubak, M., Hoekstra, A., Hertzberger, B., (Eds.),  Proc. Int. Conf. High Performance Computing and Networking, Amsterdam, April 12-14, 1999, Lecture Notes in Computer Science 1593, Springer, 1999, pp. 543-552.

  78. Maksymowicz, A. Z., Bubak, M., Zajac, K., Magdon, M.,  Computer Simulation of Ageing with Extended Penna Model, in: Sloot, P., Bubak, M., Hoekstra, A., Hertzberger, B., (Eds.),  Proc. Int. Conf. High Performance Computing and Networking, Amsterdam, April 12-14, 1999, Lecture Notes in Computer Science 1593, Springer, 1999, pp. 43-49.

  79. Bubak, M., łuszczek, P., and Wierzbowska, A.,  Porting CHAOS Library to MPI, in : Alexandrov, V., Dongarra, J., (eds.)  Recent Advances in Parallel Virtual Machine and Message Passing Interface, Proc. 5th European PVM/MPI Users' Group Meeting, Liverpool, UK, September 7-9, 1998, Lecture Notes in Computer Science 1497, Springer Verlag, pp. 131-136.

  80. Bubak, M., Funika, W., Iskra, K., and Maruszewski, R.,  On-Line Performance Monitoring Using OMIS, in : Alexandrov, V., Dongarra, J., (eds.)  Recent Advances in Parallel Virtual Machine and Message Passing Interface, Proc. 5th European PVM/MPI Users' Group Meeting, Liverpool, UK, September 7-9, 1998, Lecture Notes in Computer Science 1497, Springer Verlag, pp. 3-10.

  81. Bubak, M., Funika, W., Mościński, R.:  Tuning the Performance of Parallel Programs on NOWs using Performance Analysis Tool, in: B. Kaegstroem, J. Dongarra, E. Elmroth and J. Waśniewski (eds). Applied Parallel Computing, 4th International Workshop, PARA'98, Lecture Notes in Computer Science, 1541 Springer-Verlag, Berlin, 1998, pp. 43-47.

  82. Bubak, M., Funika, W., Mościński, J.,  Evaluation of Parallel Application's Behavior in Message Passing Environment, in: Bubak, M., Dongarra, J., Waśniewski, J.,  Recent Advances in Parallel Virtual Machine and Message Passing Interface,  Proceedings of 4th European PVM/MPI Users' Group Meeting, Cracow, Poland, November 1997, Lecture Notes in Computer Science 1332, Springer-Verlag, Berlin-Heidelberg, 1997, pp. 234-241.

  83. Bubak, M., Cieśla, W., Sowa, K.,  Object-Oriented Library of Parallel Genetic Algorithms and its Implementation on Workstations and HP/Convex Exemplar in:  Hertzberger, B., Sloot, P., (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Vienna, Austria, April 28-30, 1997,  Lecture Notes in Computer Science 1225, pp.514-523, Springer, 1997.

  84. Bubak, M., Funika, W., Mościński, J.,  Performance Analysis Environment for Parallel Applications on Networked Workstations, in:  Hertzberger, B., Sloot, P., (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Vienna, Austria, April 28-30, 1997,  Lecture Notes in Computer Science 1225, pp.1002-1005, Springer, 1997.

  85. Chrobak, R., Bubak, M., Kitowski, J., Mościński, J.,  Parallel FEM Simulation of Forging Processes on Workstations and HP/Convex Exemplar, in:  Hertzberger, B., Sloot, P., (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Vienna, Austria, April 28-30, 1997,  Lecture Notes in Computer Science 1225, pp.1018-1021, Springer, 1997.

  86. Bubak, M., Cieśla, W., Sowa, K.,  Parallel object-oriented library of genetic algorithms, in:  Waśniewski, J., Dongarra, J., Madsen, K., and Olesen, D., (Eds.),  Applied parallel computing - industrial computation and optimization, Proc. Third International Workshop, PARA'96 , Lyngby, Denmark, August 18-21, 1996, Lecture Notes in Computer Science, 1184, pp. 135-146, Springer, 1996.

  87. Bubak, M., Funika, W., Mościński, J.,  Monitoring of performance of PVM applications on virtual network computer in:  Waśniewski, J., Dongarra, J., Madsen, K., and Olesen, D., (Eds.),  Applied parallel computing - industrial computation and optimization, Proc. Third International Workshop, PARA'96 , Lyngby, Denmark, August 18-21, 1996, Lecture Notes in Computer Science, 1184, pp. 147-156, Springer, 1996.

  88. Bubak, M., M., Mościński, J., Pogoda, M.,  Distributed 2-D molecular dynamics simulation on networked workstations and multiprocessors, in:  Liddell, H., Colbrook, A., Hertzberger, B., Sloot, P., (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Brussels, Belgium, April 15-19, 1996,  Lecture Notes in Computer Science 1067, pp.243-250, Springer, 1996.

  89. Bubak, M.,  2-D cellular automata and short range molecular dynamics programs for simulations on networked workstations and parallel computers, in:  Dongarra, J., Madsen, K., Waśniewski, J., (Eds.), Proc. PARA95 - the Second International Workshop on Applied Parallel Computing in Physics, Chemistry and Engineering Science, Lyngby, Denmark, August 21-24, 1995,  Lecture Notes in Computer Science 1041, pp. 61-69, Springer-Verlag, 1996.

  90. Bubak, M., Owczarz, W., Waśniewski, J.,  Parallel algebra computation on parallel machines, in: Dongarra, J., Madsen, K., Waśniewski, J., (Eds.), Proc. PARA95 - the Second International Workshop on Applied Parallel Computing in Physics, Chemistry and Engineering Science, Lyngby, Denmark, August 21-24, 1995,  Lecture Notes in Computer Science 1041, pp. 69-78, Springer-Verlag, 1996.

  91. Bubak, M., Funika, W., Mościński, J., and Tasak, D.,  Pablo based performance monitoring tool for PVM applications in:  Dongarra, J., Madsen, K., Waśniewski, J., (Eds.), Proc. PARA95 - the Second International Workshop on Applied Parallel Computing in Physics, Chemistry and Engineering Science, Lyngby, Denmark, August 21-24, 1995,  Lecture Notes in Computer Science 1041, pp. 79-87, Springer-Verlag, 1996.

  92. Bubak, M., Mościński, J., Pogoda, M., Słota, R.,  Load balancing for lattice gas and molecular dynamics simulations on networked workstations, in:  Hertzberger, B., Serazzi, G., (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Milan, Italy, May 1995, Lecture Notes in Computer Science 796, pp. 329-334, Springer-Verlag, 1995.

  93. Bubak, M., Mościński, J., Pogoda, M., Zdechlikiewicz, W.,  Parallel distributed 2-D short-range molecular dynamics on networked workstations, in: Dongarra, J.J., Hansen, P.C, and Waśniewski, J.,  Proc. PARA'94 - Workshop on Parallel Scientific Computing, Lyngby, Denmark, June 1994,  Report UNIC-94-05; and in: Dongarra, J., Waśniewski, J. (Eds.):  Parallel Scientific Computing, Lecture Notes in Computer Science 879, Springer-Verlag, 1994, pp.127-135.

  94. Bubak, M., Mościński, J., Słota, R.,  Implementation of parallel lattice gas program on workstations under PVM, in: Dongarra, J.J., Hansen, P.C, and Waśniewski, J.,  Proc. PARA'94 - Workshop on Parallel Scientific Computing, Lyngby, Denmark, June 1994,  Report UNIC-94-05; and in: Dongarra, J., Waśniewski, J. (Eds.):  Parallel Scientific Computing, Lecture Notes in Computer Science 879, Springer-Verlag, 1994, pp. 136-146.

  95. Boryczko, K., Bubak, M., Gajęcki, M., Kitowski, J., Mościński, J., Pogoda, M.,  Transmission rates and performance of a network of computers, in:  Gentzsch, W., Harms, U., (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Munich, Germany, April 1994, Lecture Notes in Computer Science 797, pp. 142-149, Springer-Verlag, 1994.

  96. Boryczko, K., Bubak, M., Kitowski, J., Mościński, J., Słota, R,  Lattice gas automata and molecular dynamics on a network of computers, in:  Gentzsch, W., Harms, U., (Eds.), Proc. Int. Conf. High Performance Computing and Networking, Munich, Germany, April 1994, Lecture Notes in Computer Science 796, pp. 177-180, Springer-Verlag, 1994.

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Selected conference papers

  1. Katarzyna Rycerz and Marian Bubak: Component Approach to Distributed Multiscale Simulations, SIMULTECH 2011, 1st International Conference on Simulation, Modeling Technologies and Applications, Noordwijkerhout, pp. 122-127, The Netherlands, 29-31 July, 2011

  2. Maciej Malawski, Jan Meizner, Marian Bubak, Pawel Gepner: Component Approach to Computational Applications on Clouds. Procedia CS 4: 432-441 (2011)

  3. Bartosz Balis, Marek Kasztelnik, Marian Bubak, Tomasz Bartynski, Tomasz Gubala, Piotr Nowakowski, Jeroen Broekhuijsen: The UrbanFlood Common Information Space for Early Warning Systems. Procedia CS 4: 96-105 (2011)

  4. Marian Bubak, Piotr Nowakowski, Tomasz Gubala, Eryk Ciepiela: QUILT – Interactive Publications, FET11 – The European Future Technologies Conference and Exhibition, Budapest, May 4-6, 2011

  5. Frank Berretz, Sascha Skorupa, Volker Sander, Adam Belloum, Marian Bubak: Actor-Driven Workflow Execution in Distributed Environments. Euro-Par Workshops 2010: 287-294

  6. M. Assel, D. van de Vijver, P. Libin, K. Theys, D. Harezlak, B. O Nuallain, P. Nowakowski, M. Bubak, A-M. Vandamme, S. Imbrechts, R. Sangeda, T. Jiang, D. Frentz, and P. Sloot: A Collaborative Environment Allowing Clinical Investigations on Integrated Biomedical Databases, in T. Solomonides, M. Hofmann-Apitius, M. Fredigmann, S. Cludius Semler, Y. Legre, and M. Kratz: Healthgrid Research, Innovation and Business Case; Proceedings of HealthGrid 2009, 29 June - 1 July, 2009, Berlin, Studies in Health Technology and Informatics, vol 147, IOS Press, ISSN 0926-9630, pp 51 -61  

  7. Zhiming Zhao, Adam Belloum, and Marian Bubak: Support for Cooperative Experiments in VL-e: From Scientific Workflow to Knowledge Sharing, 4th IEEE international conference on e-science and Grid Computing, Indianapolis, USA, 2008

  8. M. Dyrda, M. Malawski, M. Bubak, S. Naqvi: Providing security for MOCCA component environment, 11th International Workshop on Javatm and Components for Parallelism, Distribution and Concurrency at IEEE International Symposium on Parallel and Distributed Processing - IPDPS2009, May 25-29, Rome,
    http://doi.ieeecomputersociety.org/10.1109/IPDPS.2009.5161082 

  9. M. Malawski, T. Gubala, M. Kasztelnik, T. Bartynski, M. Bubak: High-level scripting approach for building componet-based applications on the Grid,in: M. Danelutto, P. Fragopoulou, V. Getov (Eds.), Making Grids Work: Proceedings of the CoreGRID Workshop on Programming models Grid and P2P System Architecture, Grid systems, tools and environments, 12-13 June 2007, Heraklion, Crete, Greece, New York: Springer Science Business Media, 2008., pp. 319-321 

  10. M. Malawski, J. Kocot, I. Ryszka, M. Bubak, M. Wieczorek: Optimization of application execution in the GridSpace of environment, in: S. Gorlatch, P. Fragopoulou, T. Priol (Eds.), CoreGRID Integration Workshop 2008 Integrated Research in Grid Computing: April 2-4, Hersonissos, Crete, Greece: Proceedings, Heraklion, Crete, University Press, 2008. pp. 403-405

  11. M. Bubak, T. Gubala, M. Malawski, B. Balis, W. Funika, T. Bartynski, E. Ciepiela, D. Harezlak, M. Kasztelnik, J. Kocot, D. Krol, P. Nowakowski, M. Pelczar, J. Wach, M. Assel, A. Tirado-Ramos: Virtual Laboratory for Development and Execution of Biomedical Collaborative Applications," , 21st IEEE Symposium on Computer-Based Medical Systems, pp. 373-378, 2008

  12. B. Balis and M. Bubak: An Ontology Model for Execution Records of Grid Scientific Applications, in SKG '08: Proceedings of the 2008 Fourth International Conference on Semantics, Knowledge and Grid, pages 34-41, Washington, DC, USA, 2008. IEEE Computer Society.

  13. B. Balis and M. Bubak: Monitoring Infrastructure for Grid Scientific Workflows, in E. Deelman and I. Taylor, editors, The 3rd Workshop on Workflows in Support of Large-Scale Science, in conjunction with SC 2008, Austin, TX, November 17, 2008, 2008.

  14. B. Balis, M. Bubak, M. Pelczar, and J. Wach: Provenance Tracking and Querying in the ViroLab Virtual Laboratory, in CCGRID '08: Proceedings of the 2008 Eighth IEEE International Symposium on Cluster Computing and the Grid (CCGRID) 19-22 May 2008, Lyon, France, pp 675-680, Washington, DC, USA, 2008. IEEE Computer Society.

  15. K. Rycerz, M. Bubak, P. M. A. Sloot: HLA Component Based Environment For Distributed Multiscale Simulations, in: T. Priol and M. Vanneschi (Eds.), From Grids to Service and Pervasive Computing, Springer, 2008, pp. 229-239

  16. Tomasz Szepieniec, Marian Bubak: Investigation of the DAG eligible jobs maximization algorithm in a grid. Proc. 9th IEEE/ACM International Conference on Grid Computing (Grid 2008), Tsukuba, Japan, September 29 - October 1, 2008, IEEE, pp. 340-345, 2008

  17. Piotr Nowakowski, Daniel Harezlak, Marian Bubak: A New Approach to Development and Execution of Interactive Applications on the Grid, 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 19-22 May 2008, Lyon, France, IEEE Computer Society, pp. 681-686

  18. Adianto Wibisono, Zhiming Zhao, Adam Belloum, Marian Bubak: A Framework for Interactive Parameter Sweep Applications, 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 19-22 May 2008, Lyon, France, IEEE Computer Society, pp. 703

  19. Marian Bubak, Daniel Har\c{e\.zlak, Piotr Nowakowski, Tomasz Gubała, and Maciej Malawski:Appea: A Platforma for Development and Execution of Grid Applications.in:P. Cunningham, M. Cunningham (Eds.): Expanding the KnowledgeEconomy: Issues, Applications, Case Studies, IOS Press, 2007, pp 123-130.

  20. Marian Bubak, Tomasz Gubała, Marek Kasztelnik, Maciej Malawski, Piotr Nowakowski, Peter M.A. Sloot: Collaborative Virtual Laboratory for e-Health. in: P. Cunningham, M. Cunningham (Eds.): Expanding the Knowledge Economy: Issues, Applications, Case Studies, IOS Press, 2007, pp 537-544

  21. Peter M.A. Sloot, Alfredo Tirado-Ramos, Marian Bubak Multi-Science Decision Support for HIV Drug Resistance Treatment. in: P. Cunningham, M. Cunningham (Eds.): Expanding the Knowledge Economy: Issues, Applications, Case Studies, IOS Press, 2007, pp 597-606

  22. B. Balis, M. Bubak, and M. Pelczar: From Monitoring Data to Experiment Information - Monitoring of Grid Scientific Workflows. In Proc. 3rd IEEE International Conference on e-Science and GridComputing, e-Science 2007. IEEE Computer Society, December 2007, in print.

  23. B. Balis, M. Bubak, and J. Wach: User-Oriented Querying over Repositories of Data and Provenance. In Proc. 3rd IEEE International Conference on e-Science and Grid Computing, e-Science 2007. IEEE Computer Society, December 2007, in print.

  24. Katarzyna Rycerz, Marian Bubak, Peter Sloot, Vladimir Getov: Problem Solving Environment for Distributed Interactive Simulationsin: Sergiei Gorlatch, Marian Bubak, and Thierry Priol (Eds). Achievements in European Reseach on Grid Systems. CoreGRID Integration Workshop 2006 (Selected Papers) Springer, 2008, ISBN-13: 978-0-387-72811-7; pp 55 - 66

  25. Rosa M. Badia, Raul Sirvent, Marian Bubak, Piotr Machner, Wlodzimierz Funika: Performance Monitoring of GRID superscalar with OCM-G/G-PMin: Sergiei Gorlatch, Marian Bubak, and Thierry Priol (Eds). Achievements in European Reseach on Grid Systems. CoreGRID Integration Workshop 2006 (Selected Papers)Springer, 2008, ISBN-13: 978-0-387-72811-7; pp 193 - 205

  26. Maciej Malawski, Marian Bubak, Francois Baude, Denis Caromel, Ludovic Henrio, and Matthieu Morel: Interoperability of GRID Component Models: GCM and CCA CaseStudy. in: Thierry Priol, Marco Vanneschi (Eds).Towards Next Generation Grids. Proceedings of the CoreGRID Symposium 2007, August 27-28, Rennes, France, Springer, 2007, ISBN 978-0-387-72497-3;pp 95 - 105

  27. T. Gubala, D. Herezlak, M. Bubak, M. Malawski, Semantic Composition of Scientific Workflows Based on the Petri Nets Formalism, Proc. of e-Science 2006, Second IEEE International Conference on e-Science and Grid Computing, Dec. 4-6, 2006, Amsterdam, ISBN-0-7695-2734-5 Library of Congress 2006935674, IEEE Computer Society, Conference Publishing Services, http://www.computer.org/proceedings/

  28. H.-L. Truong, P. Brunner, T. Fahringer, F. Nerieri, R. Samborski, B. Balis, M. Bubak, J. Rozkwitalski, K-WfGrid Distributed Monitoring and Performance Analysis Servicesfor Workflows in the Grid, Proc. of e-Science 2006, Second IEEE International Conference on e-Science and Grid Computing, Dec. 4-6, 2006, Amsterdam, ISBN-0-7695-2734-5 Library of Congress 2006935674, IEEE Computer Society, Conference Publishing Services, http://www.computer.org/proceedings/

  29. K. Rycerz, M. Bubak, M. Malawski, P. Sloot, Grid Support for HLA-Based Collaborative Environment for Vascular Reconstruction, Proc. of e-Science 2006, Second IEEE International Conference on e-Science and Grid Computing, Dec. 4-6, 2006, Amsterdam, ISBN-0-7695-2734-5 Library of Congress 2006935674, IEEE Computer Society, Conference Publishing Services, http://www.computer.org/proceedings/

  30. W. Funika, P. Godowski, P. Pegiel, and M. Bubak, Towards User-Defined Performance Monitoring of DistributedJava Applications, Proc. of e-Science 2006, Second IEEE International Conference on e-Science and Grid Computing, Dec. 4-6, 2006, Amsterdam, ISBN-0-7695-2734-5 Library of Congress 2006935674, IEEE Computer Society, Conference Publishing Services, http://www.computer.org/proceedings/

  31. B. Balis, M. Bubak, J. Dziwisz, H.-L. Truong, T. Fahringer, Integrated Monitoring Framework for Grid Infrastructure and Application, P. Cunningham and M. Cunningham (Eds), Innovationand the Knowledge Economy. Issues, Applications, Case Studies, IOS Press, 2005, 269-276

  32. K. Rycerz, B. Balis, R. Szymacha, M. Bubak, P.M.A. Sloot, Monitoring of HLA Grid Application Federates with OCM-G, in: S.J. Turner, D. Roberts, L. Wilson (eds), Eighth IEEE International Symposium on Distributed Simulation and Real-Time Applications (DS-RT'04), IEEE, Budapest, Hungary, October 2004. ISBN 3-540-22116-6, 125-132, 2004

  33. P.M.A. Sloot, A. Tirado-Ramos, A.G. Hoekstra, M. Bubak, An Interactive Grid Environment for Non-Invasive Vascular Reconstruction, 2nd International Workshop on Biomedical Computationson the Grid (BioGrid'04), in conjunction with Fourth IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid2004), (CD-ROM IEEE Catalog 04EX836C) IEEE, Chicago, Illinois, USA, April 2004.ISBN 0-7803-8431-8, 2004

 
 

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